All pull requests

Pull requests

• fix(tl): sliding_window overlap columns as bool, not object

  #1327·selmanozleyen opened Oct 27, 2026Member·

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• fix: clean up parallelize progress on errors

  #1323·viranovskaya opened Oct 21, 2026Contributor·

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• fix: restore Numba threads after parallelize callbacks

  #1322·viranovskaya opened Oct 21, 2026Contributor·

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  1

  

• fix(im): scale images to 0-1 per channel before cp_measure

  release-fixed
  #1321·timtreis opened Oct 21, 2026Member·

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• chore(deps): bump the actions-deps group across 1 directory with 3 updates

  dependenciesgithub_actions
  #1316·dependabot[bot] opened Oct 19, 2026Bot·

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• feat: reuse SpatialData table coordinates for spatial neighbors

  #1313·Georicl opened Oct 13, 2026Contributor·

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• perf: numbafy spatial_autocorr permutations

  #1303·selmanozleyen opened Sep 26, 2026Member·

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• fix: tile-invariant featurization (positions, truncation, multiscale, granularity) + lower output memory

  #1295·timtreis opened Sep 21, 2026Member·

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  1

• feat: add sort_order to spatial_scatter

  #1291·Georicl opened Sep 14, 2026Contributor·

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• [pre-commit.ci] pre-commit autoupdate

  #1283·pre-commit-ci[bot] opened Aug 31, 2026Bot·

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  1

• feat: automatic K selection (CellCharter's ClusterAutoK)

  #1276·selmanozleyen opened Aug 22, 2026Member·

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• Emergent-seam cut-cell detection for calculate_tiling_qc (dense tissue / wide gaps / single-sided cuts)

  #1255·timtreis opened Aug 6, 2026Member·

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  1

• feat: stalign api and landmark alignment

  release-added
  #1195·selmanozleyen opened Jun 1, 2026Member·

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  19

  

• Add spatialdata-plot delegation backend (gated by feature flag)

  #1173·timtreis opened May 12, 2026Member·

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• Draft: add contour-based ring density and smooth signed-distance density for SpatialData

  #1163·hutaobo opened Apr 16, 2026·

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• Feat/gene imputation

  #1161·MDLDan opened Apr 16, 2026Contributor·

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• Add pluggable backend dispatch system

  #1151·Intron7 opened Apr 7, 2026Member·

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• Improved sliding windows

  #1116·schrf opened Feb 10, 2026·

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• Add new spatial graph features and tests (closes #901)

  #1091·luckyy14 opened Jan 3, 2026·

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• Add Pytest Benchmarks Feature

  pytest-benchmark
  #1070·selmanozleyen opened Dec 1, 2025Member·

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• Use the correct image for scatter plots with alternate spatial bases

  #1032·obriencshl opened Sep 8, 2025·

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• Adding Benchmarks

  benchmarkenhancement ✨
  #1016·selmanozleyen opened Jul 10, 2025Member·

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• sq.pp.filter_cells for SpatialData

  #1011·selmanozleyen opened Jun 18, 2025Member·1 task done·

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• Add filter function that subsets the entire object

  #967·timtreis opened Mar 4, 2025Member·

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• Add method to calculate embeddings for variable by distance aggregation

  featuresquidpy2.0
  #807·LLehner opened Mar 4, 2024Member·2 tasks·

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  4